Scientific Papers

 Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment
Andriy Kryshtafovych, John Moult, Wendy M. Billings, Dennis Della Corte, Krzysztof Fidelis, Sohee Kwon, Kliment Olechnovič, Chaok Seok, Česlovas Venclovas, Jonghun Won, Badri Adhikari, Recep Adiyaman, Joaquim Aguirre-Plans, Minkyung Baek, David Baker, Frederico Baldassarre, Jacob Barger, Sutanu Bhattacharya, Debswapna Bhattacharya, Mor Bitton, Renzhi Cao, Jianlin Cheng, Charles Christoffer, Cezary Czaplewski, Zongyang Du, Arne Elofsson, Eshel Faraggi, Michael Feig, Narcis Fernandez-Fuentes, Nick Grishin, Sergei Grudinin, Zhiye Guo, Yuya Hanazono, Demis Hassabis, Bryce Hedelius, Lim Heo, Cassandra Hunt, Ilia Igashov, Takashi Ishida, Robert L. Jernigan, David Jones, John Jumper, Maria Kadukova, Shaun Kandathil, Chen Keasar, Daisuke Kihara, Lisa Kinch, Yasuomi Kiyota, Andrzej Kloczkowski, Pushmeet Kohli, Mateusz Kogut, Elodie Laine, Cade Lilley, Jian Liu, Józef Adam Liwo, Emilia Lubecka, Arup Mondal, Connor J. Morris, Liam J. McGuffin, Alexis Molina, Tsukasa Nakamura, Baldo Oliva, Alberto Perez, Gabriele Pozzati, Daipayan Sarkar, Rin Sato, Torsten Schwede, Bikash Shrestha, Tomer Sidi, Gabriel Studer, Md Hossain Shuvo, Mayuko Takeda-Shitaka, Yuma Takei, Genki Terashi, Kentaro Tomii, Yuko Tsuchiya, Kathryn Tunyasuvunakool, Björn Wallner, Tianqi Wu, Jinbo Xu, Yu Yamamori, Jianyi Yang, Lisha Ye, Chengxin Zhang, Yang Zhang, Wei Zheng , Proteins-Structure Function and Bioinformatics, 2021, 89, 12, 1987-1996.

Theory and practice of coarse-grained molecular dynamics of biologically important systems
Józef Adam Liwo, Cezary Czaplewski, Adam Sieradzan, Agnieszka Lipska, Sergey Samsonov, Rajesh K. Murarka , Biomolecules, 2021, 11, 9, 1-31,

Theoretical investigation of the structural insights of the interactions of γ-Fe2O3 nanoparticle with (EMIM TFSI) ionic liquid
Adam Sieradzan, Cezary Czaplewski, Aleksandra Bielicka-Giełdoń, Maciej Bobrowski, Artur Giełdoń , J. Mol. Liq., 2021, 340, 1-13,

Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.
A. Liwo, C. Czaplewski, A.K. Sieradzan, E.A. Lubecka, A.G. Lipska, Ł. Golon, A. Karczyńska, P. Krupa, M.A. Mozolewska, M. Makowski, R. Ganzynkowicz, A. Giełdoń, M. Maciejczyk
Progress in Molecular Biology and Translational Science 2020, 170, 73-122

A peptidomimetic fluorescent probe to detect the trypsin β2 subunit of the human 20S proteasome
M. Wysocka, A. Romanowska, N. Gruba, M. Michalska , A. Giełdoń, A. Lesner
Int. J. Mol. Sci. 2020, 21, 1-16

Hydrophobic hydration and pairwise hydrophobic interaction of Lennard-Jones and Mie particles in different water models.
K. Zięba, C. Czaplewski, A. Liwo, G. Graziano,
Phys. Chem. Chem. Phys. 2020, 22, 4758-4771

Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13.
A.S. Karczyńska, K. Zięba, U. Uciechowska, M.A. Mozolewska, P. Krupa, E.A. Lubecka, A.G. Lipska, C. Sikorska, S.A. Samsonov, A.K. Sieradzan, A. Giełdoń, A. Liwo, R. Ślusarz, M. Ślusarz, J. Lee, K. Joo, C. Czaplewski,
J. Chem. Inf. Model. 2020, 60, 1844-1864

Extension of the force-matching method to coarse-grained models with axially symmetric sites to produce transferable force fields: Application to the UNRES model of proteins.
A Liwo, C Czaplewski,
J. Chem. Phys. 2020, 152, 054902.

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
M.F Lensink, G. Brysbaert, N. Nadzirin, S. Velankar, R.A.G. Chaleil, T. Gerguri, P.A. Bates, E. Laine, A. Carbone, S. Grudinin, R. Kong, R. Liu, X. Xu, H. Shi, S. Chang, M. Eisenstein, A. Karczynska, C. Czaplewski, E. Lubecka, A. Lipska, P. Krupa, M. Mozolewska, Ł. Golon, S. Samsonov, A. Liwo, S. Crivelli, G. Pagès, M. Karasikov, M. Kadukova, Y. Yan, S. Huang, M. Rosell, L.A. Rodríguez‐Lumbreras, M. Romero‐Durana, L. Díaz‐Bueno, J. Fernandez‐Recio, C. Christoffer, G. Terashi, W. Shin, T. Aderinwale, S.R.M.V. Subraman, D. Kihara, D. Kozakov, S. Vajda, K. Porter, D. Padhorny, I. Desta, D. Beglov, M. Ignatov, S. Kotelnikov, I.H. Moal, D.W. Ritchie, I.C. de Beauchêne, B. Maigret, M.D. Devignes, M.E.R. Echartea, D. Barradas‐Bautista, Z. Cao, L. Cavallo, R. Oliva, Y. Cao, Y. Shen, M. Baek, T. Park, H. Woo, C. Seok, M. Braitbard, L. Bitton, D. Scheidman‐Duhovny, J. Dapkūnas, K. Olechnovič, Č. Venclovas, P.J. Kundrotas, S. Belkin, D. Chakravarty, V.D. Badal, I.A. Vakser, T. Vreven, S. Vangaveti, T. Borrman, Z. Weng, J.D. Guest, R. Gowthaman, B.G. Pierce, X. Xu, R. Duan, L. Qiu, J. Hou, B. Ryan Merideth, Z. Ma, J. Cheng, X. Zou, P.I. Koukos, J. Roel‐Touris, F. Ambrosetti, C. Geng, J. Schaarschmidt, M.E. Trellet, A.S.J. Melquiond, L. Xue, B. Jiménez‐García, C.W. van Noort, R.V. Honorato, A.M.J.J. Bonvin, S.J. Wodak
Proteins 2019, 87, 1200-1221

Introduction of phosphorylated residues into the UNRES coarse-grained model: toward modeling of signaling processes
A. Sieradzan, M. Bogunia, P. Mech, R. Ganzynkowicz, A. Giełdoń, A. Liwo, M. Makowski
J. Phys. Chem. B 2019, 123, 5721-5729

1-substituted sialorphin analogues - synthesis, molecular modelling and in vitro effect on enkephalins degradation by NEP
M. Sobocińska, A. Giełdoń, J. Fichna, E. Kamysz
Amino Acids 2019, 51, 1201-1207

Structure-based design and in vivo anti-arthritic activity evaluation of a potent dipeptidyl cyclopropyl nitrile inhibitor of cathepsin C.
B. Korkmaz, A. Lesner, M. Wysocka, A. Giełdoń, M. Håkansson, F. Gauthier, D.T. Logan, D. Jenne, C. Lauritzen, J. Pedersen,
Biochem. Pharmacol. 2019, 164, 349-367

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
J.E. Fajardo, R. Shrestha, N. Gil, A. Belsom, S.N. Crivelli, C. Czaplewski, K. Fidelis, S. Grudinin, M. Karasikov, A.S. Karczyńska, A. Kryshtafovych, A. Leitner, A. Liwo, E.A. Lubecka, B. Monastyrskyy, G. Pagès, J. Rappsilber, A.K. Sieradzan, C. Sikorska, E. Trabjerg, A. Fiser,
Proteins 2019, 87, 1283-1297

Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
E.A. Lubecka, A.S. Karczyńska, A.G. Lipska, A.K. Sieradzan, K. Ziȩba, C. Sikorska, U. Uciechowska, S.A Samsonov, P. Krupa, M.A. Mozolewska, Ł. Golon, A. Giełdoń, C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo,
J. Mol. Graph. Model. 2019, 92, 154-166

Extension of the UNRES coarse-grained force field to membrane proteins in the lipid bilayer.
K. Ziȩba, M. Ślusarz, R. Ślusarz, A. Liwo, C. Czaplewski, A.K. Sieradzan,
J. Phys. Chem. B 2019, 123, 7829-7839

A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials in the UNRES force field and force-field calibration and validation.
A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I. Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej,
J. Chem. Phys. 2019, 150, 155104

Processing and maturation of cathepsin C zymogen: a biochemical and molecular modeling analysis.
A.S. Lamort, Y. Hamon, C. Czaplewski, A. Giełdoń, S. Seren, L. Coquet, F. Lecaille, A. Lesner, G. Lalmanach, F. Gauthier, D. Jenne, B. Korkmaz,
Int. J. Mol. Sci. 2019, 20, 4747

Formation of secondary and supersecondary structure of proteins as a result of coupling between local and backbone-electrostatic interactions: a view through cluster-cumulant scope.
A. Liwo, A.K. Sieradzan, C. Czaplewski,
In: Kister A. (eds) Protein Supersecondary Structures. Methods in Molecular Biology, vol 1958. Humana Press, New York, NY, pp. 133-146 (2019).

Use of Coarse-Grained and All-Atom Molecular Dynamics to Study Hsp70 and Hsp40 Chaperone Action,
E.I. Golas, M.A. Mozolewska, P. Krupa, C. Czaplewski, H.A. Scheraga, A. Liwo
in Frontiers in Structural Biology Vol. 1 edited by M.D. Galigniana, Bentham Publishers, pp 23-46 (2018).
ISBN: 978-1-68108-616-3

High performance computing with coarse-grained model of biological macromolecules.
E. Lubecka, A. Sieradzan, C. Czaplewski, P. Krupa, A. Liwo,
Supercomputing Frontiers and Innovations 2018, 5, 63-75.

Impact of selected amino acids of HP0377 (Helicobacter pylori thiol oxidoreductase) on its functioning as a CcmG (cytochrome c maturation) protein and Dsb (disulfide bond) isomerase,
M. J. Grzeszczuk, A. Bak, A. M. Banas, P. Urbanowicz, S. Dunin-Horkawicz, A. Gieldon, C. Czaplewski, A. Liwo, E.K. Jagusztyn-Krynicka,
Plos One 2018, 13, e0195358.

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics,
C. Czaplewski, A. Karczyńska, A.K Sieradzan, A. Liwo
Nucleic Acids Res. 2018, 46, W304-W309.

Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: test with CASP12 targets,
A. Karczyńska, M.A. Mozolewska, P. Krupa, A.Giełdoń, K.K. Bojarski, B. Zaborowski, A. Liwo, R. Ślusarz, M. Ślusarz, J. Lee, K. Joo, C. Czaplewski,
J. Mol. Graph. Model. 2018, 83, 92-99.

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12,
C. Keasar, L. McGuffin, B. Wallner, G. Chopra, B. Adhikari, D. Bhattacharya, L. Blake, L. Bortot, R. Cao, B.K. Dhanasekaran, I. Dimas, R. Faccioli, E. Faraggi, R. Ganzynkowicz, S. Ghosh, S. Ghosh, A. Gieldon, L. Golon, Y. He, L. Heo, J. Hou, M. Khan, F. Khatib, G. Khoury, C. Kieslich, D. Kim, P. Krupa, G.R. Lee, H. Li, J. Li, A. Lipska, A. Liwo, A. Maghrabi, M. Mirdita, S. Mirzaei, M. Mozolewska, M. Onel, S. Ovchinnikov, A. Shah, U. Shah, T. Sidi, A. Sieradzan, M. Ślusarz, R. Slusarz, J. Smadbeck, P. Tamamis, N. Trieber, T. Wirecki, Y. Yin, Y. Zhang, J. Bacardit, M. Baranowski, N. Chapman, S. Cooper, Al. Defelicibus, J. Flatten, B. Koepnick, Z. Popović, B. Zaborowski, D. Baker, J. Cheng, C. Czaplewski, A. Delbem, C. Floudas, A. Kloczkowski, S. Ołdziej, M. Levitt, H. Scheraga, C. Seok, J. Söding, S. Vishveshwara, D. Xu, and S. Crivelli
Scientific Reports 2018, 8, 9939.

Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information,
A. Karczyńska, M.A. Mozolewska, P. Krupa, A. Giełdoń, A. Liwo, C. Czaplewski,
Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239. CASP12 special issue.

Acid-base properties of 3-[2-(n-quinolinyl)benzoxazol-5-yl]alanine derivatives in the ground and excited state. Experimental and theoretical studies,
A. Lewandowska, D. Wroblewski, K. Guzow, M. Milewska, C. Czaplewski, W. Wiczk
J. Photochem. Photobiol. A - Chemistry 2018, 353, 191-199.

Biochemical properties of the HtrA homolog from bacterium Stenotrophomonas maltophilia,
U. Zarzecka, A. Modrak-Wojcik, M. Bayassi, M. Szewczyk, A. Gieldon, A. Lesner, T. Koper, A. Bzowska, M. Sanguinetti, S. Backert, B. Lipinska, J. Skorko-Glonek,
Int. J. Biol. Macromol. 2018, 109, 992-1005.

Microscopic Physics-Based Models of Proteins and Nucleic Acids: UNRES and NARES,
M. Baranowski, C. Czaplewski, E. Golas, Y. He, D. Jagiela, P. Krupa, A. Liwo, G.G. Maisuradze, M. Makowski, M.A. Mozolewska, A. Niadzvedtski, A.J. Niemi, S. Rackovsky, R. Slusarz, A.K. Sieradzan, S. Oldziej, T. Wirecki, Y. Yin, B. Zaborowski, H.A. Scheraga,
in Coarse-Grained Modeling of Biomolecules (Series in Computational Biophysics), edited by G.A. Papoian, CRC Press (2018) pp. 67-120.
ISBN 978-1-4665-7606-3

Chemoinformatics methods for studying biomolecules,
A. Liwo, C. Czaplewski, S. Ołdziej, B. Zaborowski, D. Jagieła, J. Lee,
in Handbook of computational chemistry, edited by J. Leszczyński. Springer (2017) pp. 2183-2199.
ISBN 978-3-319-27281-8

Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins,
A. Karczyńska, C. Czaplewski, P. Krupa, M. Mozolewska, K. Joo, J. Lee, A. Liwo,
J. Comput. Chem. 2017, 38, 2730–2746.

Crystal structure of a low molecular weight activator Blm-pep with yeast 20S proteasome – insights into the enzyme activation mechanism,
J. Witkowska, M. Giżyńska, P. Grudnik, P. Golik, P. Karpowicz, A. Giełdoń, G. Dubin, E. Jankowska,
Sci. Rep. 2017, 7, 6177.

Rapid insight into C60 influence on biological functions of protein,
A. Giełdoń, M. Witt, A. Gajewicz, T. Puzyn,
Struct. Chem. 2017, 28, 1775-1788.

Selection of effective HTRA3 activators using combinatorial chemistry,
M. Wysocka, K. Sychowska, N. Gruba, Ł. Winiarski, M. Skoreński, M. Psurski, J. Makowska, A. Giełdoń, T. Wenta, M. Jarząb, P. Glaza, J. Zdancewicz, M. Sieńczyk, B. Lipińska, A. Lesner.,
ACS Comb. Sci. 2017, 19, 565-573.

Structural insights into the activation mechanisms of human HtrA serine proteases,
D. Żurawa-Janicka, T. Wenta, M. Jarząb, J. Skórko-Glonek, P. Glaza, A. Giełdoń, J. Ciarkowski, B. Lipińska,
Arch. Biochem. Biophys. 2017, 621, 6-23.

Photophysical and theoretical studies of diphenylacetylene derivatives with restricted rotation,
M. Szyszkowska, C. Czaplewski, W. Wiczk,
J. Mol. Structure 2017, 1138, 81-89.

Polymerization of chloro-p-xylylenes, quantum-chemical study,
C. Czaplewski, K. Smalara, A. Giełdoń, M. Bobrowski,
J.Mol.Model. 2017, 23, 40.

Theoretical calculation of the physico-chemical properties of 1-butyl-4-methylpyridinium based ionic liquids,
A. Giełdoń, M. Bobrowski, A. Bielicka-Giełdoń, C. Czaplewski,
J.Mol.Liq. 2017, 225, 467–474.

Role of the sulfur to α-carbon thioether bridges in thurincin H,
M.A. Mozolewska, A.K. Sieradzan, A. Niadzvedstki, C. Czaplewski, A. Liwo, P. Krupa,
J. Biomol. Struct. Dyn. 2017, 35, 2868-2879.

Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.
M. Mozolewska, P. Krupa, B. Zaborowski, A. Liwo, J. Lee, K. Joo, C. Czaplewski,
J. Chem. Inf. Model. 2016, 56, 2263-2279.

PEGylated substrates of NSP4 protease : a tool to study protease specificity
M. Wysocka, N. Gruba, R. Grzywa, A. Giełdoń, R. Bąchor, K. Brzozowski, M. Sieńczyk, J. Dieter, Z. Szewczuk, K. Rolka, A. Lesner.
Scientific Reports 2016, 6, art. no. 22856, 1-11

Molecular dynamics of protein A and a WW domain with a united-residue model including hydrodynamic interaction
A.G. Lipska, S.R. Seidman, A.K. Sieradzan, A. Giełdoń, A. Liwo, H.A. Scheraga.
J. Chem. Phys. 2016, 144, art.no.184110, 1-11

Intra- and intersubunit changes accompanying thermal activation of the HtrA2(Omi) protease homotrimer
M. Jarząb, T. Wenta, D. Żurawa-Janicka, A. Polit, A. Giełdoń, M. Wysocka, P. Glaza, J. Skórko-Glonek, J. Ciarkowski, A. Lesner, B. Lipińska.
Biochimica et Biophysica Acta. Proteins and Proteomics 2016, 1864, 283-296

Distinct 3D architecture and dynamics of the human HtrA2(Omi) protease and its mutated variants
A. Giełdoń, D. Żurawa-Janicka, M. Jarząb, T. Wenta, P. Golik, G. Dubin, B. Lipińska, J. Ciarkowski.
Distinct 3D architecture and dynamics of the human HtrA2(Omi) protease and its mutated variants
PLoS One 2016, 11, e.0161526, 1-19

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.
P. Krupa, M.A. Mozolewska, M. Wiśniewska, Y. Yin, Y. He, A.K. Sieradzan, R. Ganzynkowicz, A.G. Lipska, A. Karczyńska, M. Ślusarz, R. Ślusarz, A. Giełdoń, C. Czaplewski, D. Jagieła, B. Zaborowski, H.A. Scheraga, A. Liwo, 
Bioinformatics 2016, 32, 3270–3278

Bladder cancer detection using a peptide substrate of the 20S proteasome.
N. Gruba, M. Wysocka, M. Brzezińska, D. Dębowski, M.Sieńczyk, E. Gorodkiewicz, T. Guszcz, C. Czaplewski, K. Rolka and A. Lesner, 
FEBS J. 2016, 283, 2929–2948

Temperature-dependent structure-property modeling of viscosity for ionic liquids.
M. Barycki, A. Sosnowska, A. Gajewicz, M. Bobrowski, D. Wileńska, P. Skurski, A. Giełdoń, C. Czaplewski, S. Uhl, E. Laux, T. Journot, L. Jeandupeux, H. Keppner, T. Puzyn.
Fluid Phase Equilibria 2016, 427, 9-17

Photophysical properties of symmetrically substituted diarylacetylenes and diarylbuta-1,3-diynes
I. Bylińska, M. Wierzbicka, C. Czaplewski, Wiesław Wiczk.
Photochem. Photobiol. Sci. 2016, 15, 45-56

A maximum-likelihood approach to force-field calibration.
B. Zaborowski, D. Jagieła, C. Czaplewski, A. Hałabis, A. Lewandowska, W. Żmudzińska, S. Ołdziej, A. Karczyńska, C. Omieczynski, T. Wirecki, A. Liwo.
J. Chem. Inf. Model. 2015, 55, 2050-2070

Common functionally important motions of the nucleotide-binding domain of Hsp70
E.I. Gołaś, C. Czaplewski, H.A. Scheraga, A. Liwo.
Proteins: Struct. Funct. Bioinf. 2015, 83, 282-299

Experimental and theoretical studies of spectroscopic properties of simple symmetrically substituted diphenylbuta-1,3-diyne derivatives.
M. Wierzbicka, I. Bylińska, A. Sikorski, C. Czaplewski, W. Wiczk
Photochem Photobiol Sci. 2015, 14, 2251-2260

Experimental and theoretical studies of the spectroscopic properties of simple symmetrically substituted diphenylacetylene derivatives.
M. Wierzbicka, I. Bylińska, C. Czaplewski, W. Wiczk
RSC Adv. 2015, 5, 29294-29303

Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the United Residue (UNRES) force field for protein simulations
A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
J. Chem. Theory. Comput. 2015, 11, 817-831

Prediction of protein structure by template-based modeling combined with the UNRES force field
P. Krupa, M.A. Mozolewska, K. Joo, J. Lee, C. Czaplewski, A. Liwo.
J. Chem. Inf. Model. 2015, 55, 1271-1281

RASMOL AB - New functionalities in the program for structure analysis
M. Pikora, A. Giełdoń.
Acta Biochim. Pol 2015, 62, 629-631

A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions
A. Liwo, M. Baranowski, C. Czaplewski, E. Gołaś, Y. He, D. Jagieła, P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski, S. Ołdziej, H.A. Scheraga, A.K. Sieradzan, R. Ślusarz, T. Wirecki, Y. Yin, B. Zaborowski.
J. Mol. Model. 2014, 20, 1-15

Folding kinetics of WW domains with the united residue force field for bridging microscopic motions and experimental measurements
R. Zhou, G.G. Maisuradze, D. Suñol, T. Todorovski, M.J. Macias, Y. Xiao, H.A. Scheraga, C. Czaplewski, A. Liwo.
Proc. Natl. Acad. Sci. U.S.A. 2014, 111, 18243-18248

Rapid communication: Computational simulation and analysis of a candidate for the design of a novel silk-based biopolymer
E.I. Gołaś, C. Czaplewski.
Biopolymers. 2014, 101, 915-923

Solvatochromic studies of pull-push molecules containing dimethylaniline and aromatic hydrocarbon linked by an acetylene unit
I. Bylińska, M. Wierzbicka, C. Czaplewski, W. Wiczk,
RSC Adv. 2014, 4, 48783-48795

Towards mechanisms of nanotoxicity - interaction of gold nanoparticles with proteins and DNA
P. Krupa, M.A. Mozolewska, B. Rasulev, C. Czaplewski, J. Leszczynski,
TASK Quarterly. 2014, 18, 337-341

The LA loop as an important regulatory element of the HtrA (DegP) protease from Escherichia coli : structural and functional studies
D. Figaj, A. Giełdoń, A. Polit, A. Sobiecka-Szkatuła, T. Koper, M. Denkiewicz, B. Banecki, A. Lesner, J. Ciarkowski, B. Lipińska, J. Skórko-Glonek.
J. Biol. Chem. 2014, 289, 15880-15893

Preliminary studies on trigonelline as potential anti-Alzheimer disease agent : determination by hydrophilic interaction liquid chromatography and modeling of interactions with beta-amyloid.
J. Makowska, D. Szczesny, A. Lichucka, A. Giełdoń, L. Chmurzyński, R. Kaliszan.
J. Chromatogr. B. 2014, 968, 101-104

Improvement of the treatment of loop structures in the UNRES force field by inclusion of coupling between backbone- and side-chain-local conformational states.
P. Krupa, A.K. Sieradzan, S. Rackovsky, M. Baranowski, S. Ołdziej, H.A. Scheraga, A. Liwo, C. Czaplewski,
J. Chem. Theory. Comput. 2013, 9, 4620-4632

Acid-base properties of 3-[2-(pyridyl)benzoxazol-5-yl]alanine derivatives in the ground and excited state : experimental and theoretical studies
A. Lewandowska, K. Guzow, D. Wróblewski, C. Czaplewski, W. Wiczk,
J. Photochem. Photobiol. A Chem. 2013, 258, 10-16

Photophysical properties of 3-[2-(N-phenylcarbazolyl)benzoxazol-5-yl]alanine derivatives--experimental and theoretical studies.
K. Guzow, M. Czerwińska, A. Ceszlak, M. Kozarzewska, M. Szabelski, C. Czaplewski, A. Łukaszewicz, A.A. Kubicki, W. Wiczk,
Photochem Photobiol Sci. 2013, 12, 284-297.

Temperature-induced changes of HtrA2(Omi) protease activity and structure.
D. Zurawa-Janicka, M. Jarzab, A. Polit, J. Skorko-Glonek, A. Lesner, A. Gitlin, A. Gieldon, J. Ciarkowski, P. Glaza, A. Lubomska, B. Lipinska,
Cell Stress Chaperones. 2013, 18, 35-51.